DBNascent | Samples

SRR7550995 Sample ID 1917

**Data sources**
Paper identifier	Nair2019phase
SRP accession	SRP154850
GEO accession	GSE117494
Samples	SRR7550995

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	65 Mb
Stranded gene read counts	TXT file	913 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	696 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	RAW264.7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	1,6-hexanediol (8.5 percent)	-5 min	0 min	5 min

**Extended notes**
Pipeline info and software versions
Sample notes	Methods unclear in spots - treatments may not be accurate
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	100
Read depth after trimming	48,389,393
Duplication proportion	0.70663
Proportion reads mapped	0.6793
Exon/intron ratio	3.0304
Unique read proportion	0.36753

**Bidirectionals**
Total # Tfit bidirectionals	26948
# Promoter Tfit bidirectionals	7511
# Intronic Tfit bidirectionals	10334
# Intergenic Tfit bidirectionals	5519
Total # dREG bidirectionals	16097
# Promoter dREG bidirectionals	5225
# Intronic dREG bidirectionals	5189
# Intergenic dREG bidirectionals	4195
Part of Tfit master merge?	True
Part of dREG master merge?	True