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SRR7616134 Sample ID 473
| Paper identifier | Chu2018chromatin |
| SRP accession | SRP155663 |
| GEO accession | GSE117832 |
| Samples | SRR7616134 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | ChRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 101 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 916 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | Jurkat T cell |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | chromatin run-on and sequencing (ChRO-seq) |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 3 |
| Raw read length | 76 |
| Read depth after trimming | 41,698,800 |
| Duplication proportion | 0.46606 |
| Proportion reads mapped | 0.6431 |
| Exon/intron ratio | 5.94839 |
| Unique read proportion | 0.64045 |
| Total # Tfit bidirectionals | 33356 |
| # Promoter Tfit bidirectionals | 15516 |
| # Intronic Tfit bidirectionals | 12739 |
| # Intergenic Tfit bidirectionals | 5654 |
| Total # dREG bidirectionals | 20821 |
| # Promoter dREG bidirectionals | 7231 |
| # Intronic dREG bidirectionals | 8764 |
| # Intergenic dREG bidirectionals | 3723 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |