DBNascent | Samples

SRR7616135 Sample ID 474

**Data sources**
Paper identifier	Chu2018chromatin
SRP accession	SRP155663
GEO accession	GSE117832
Samples	SRR7616135

**Technical details**
QC score	1
Replicate	1
Protocol	ChRO-seq variant
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	128 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	683 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Jurkat T cell
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	length-extension run-on (leChRO-seq)
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	76
Read depth after trimming	40,109,251
Duplication proportion	0.27486
Proportion reads mapped	0.6186
Exon/intron ratio	3.19821
Unique read proportion	0.85541

**Bidirectionals**
Total # Tfit bidirectionals	23654
# Promoter Tfit bidirectionals	11029
# Intronic Tfit bidirectionals	9384
# Intergenic Tfit bidirectionals	3405
Total # dREG bidirectionals	15636
# Promoter dREG bidirectionals	6825
# Intronic dREG bidirectionals	6285
# Intergenic dREG bidirectionals	2031
Part of Tfit master merge?	True
Part of dREG master merge?	True