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SRR7621275 Sample ID 2081
| Paper identifier | Perreault2019epigenetic |
| SRP accession | SRP155750 |
| GEO accession | GSE118033 |
| Samples | SRR7621275 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 28 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 305 Kb |
| dREG bidirectional regions | BED file | 124 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HCC1806 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -4 hr | 0 hr | 4 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Sparse due to high adapter contamination and almost entirely duplicates |
| Sample QC score | 5 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 58,119,700 |
| Duplication proportion | 0.97164 |
| Proportion reads mapped | 0.8941 |
| Exon/intron ratio | 4.68817 |
| Unique read proportion | 0.0713 |
| Total # Tfit bidirectionals | 3402 |
| # Promoter Tfit bidirectionals | 1552 |
| # Intronic Tfit bidirectionals | 1411 |
| # Intergenic Tfit bidirectionals | 395 |
| Total # dREG bidirectionals | 2879 |
| # Promoter dREG bidirectionals | 1740 |
| # Intronic dREG bidirectionals | 888 |
| # Intergenic dREG bidirectionals | 323 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |