DBNascent | Samples

SRR7621275 Sample ID 2081

**Data sources**
Paper identifier	Perreault2019epigenetic
SRP accession	SRP155750
GEO accession	GSE118033
Samples	SRR7621275

**Technical details**
QC score	5
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	28 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	305 Kb
dREG bidirectional regions	BED file	124 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCC1806
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-4 hr	0 hr	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Sparse due to high adapter contamination and almost entirely duplicates

**Sample metrics**
Sample QC score	5
Sample NRO score	2
Raw read length	75
Read depth after trimming	58,119,700
Duplication proportion	0.97164
Proportion reads mapped	0.8941
Exon/intron ratio	4.68817
Unique read proportion	0.0713

**Bidirectionals**
Total # Tfit bidirectionals	3402
# Promoter Tfit bidirectionals	1552
# Intronic Tfit bidirectionals	1411
# Intergenic Tfit bidirectionals	395
Total # dREG bidirectionals	2879
# Promoter dREG bidirectionals	1740
# Intronic dREG bidirectionals	888
# Intergenic dREG bidirectionals	323
Part of Tfit master merge?	True
Part of dREG master merge?	True