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SRR7621281 Sample ID 2082
| Paper identifier | Perreault2019epigenetic |
| SRP accession | SRP155750 |
| GEO accession | GSE118033 |
| Samples | SRR7621281 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 139 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HCC1806 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -4 hr | 0 hr | 4 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 42,311,607 |
| Duplication proportion | 0.51969 |
| Proportion reads mapped | 0.8602 |
| Exon/intron ratio | 2.73684 |
| Unique read proportion | 0.71045 |
| Total # Tfit bidirectionals | 48841 |
| # Promoter Tfit bidirectionals | 8953 |
| # Intronic Tfit bidirectionals | 26091 |
| # Intergenic Tfit bidirectionals | 10849 |
| Total # dREG bidirectionals | 25441 |
| # Promoter dREG bidirectionals | 8007 |
| # Intronic dREG bidirectionals | 10494 |
| # Intergenic dREG bidirectionals | 6131 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |