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SRR7638782 Sample ID 1725
| Paper identifier | Lloret-llinares2018rna |
| SRP accession | SRP156202 |
| GEO accession | GSE118052 |
| Samples | SRR7638782 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 105 Mb |
| Stranded gene read counts | TXT file | 920 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 935 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | E14 |
| Strain | |
| Genotype | |
| Construct | shRNA Rbm7 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 76 |
| Read depth after trimming | 49,185,350 |
| Duplication proportion | 0.52846 |
| Proportion reads mapped | 0.6774 |
| Exon/intron ratio | 5.42118 |
| Unique read proportion | 0.52885 |
| Total # Tfit bidirectionals | 25622 |
| # Promoter Tfit bidirectionals | 7100 |
| # Intronic Tfit bidirectionals | 9197 |
| # Intergenic Tfit bidirectionals | 6862 |
| Total # dREG bidirectionals | 21627 |
| # Promoter dREG bidirectionals | 5997 |
| # Intronic dREG bidirectionals | 7130 |
| # Intergenic dREG bidirectionals | 6681 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |