DBNascent | Samples

SRR7638782 Sample ID 1725

**Data sources**
Paper identifier	Lloret-llinares2018rna
SRP accession	SRP156202
GEO accession	GSE118052
Samples	SRR7638782

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	105 Mb
Stranded gene read counts	TXT file	920 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	935 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	E14
Strain
Genotype
Construct	shRNA Rbm7

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	76
Read depth after trimming	49,185,350
Duplication proportion	0.52846
Proportion reads mapped	0.6774
Exon/intron ratio	5.42118
Unique read proportion	0.52885

**Bidirectionals**
Total # Tfit bidirectionals	25622
# Promoter Tfit bidirectionals	7100
# Intronic Tfit bidirectionals	9197
# Intergenic Tfit bidirectionals	6862
Total # dREG bidirectionals	21627
# Promoter dREG bidirectionals	5997
# Intronic dREG bidirectionals	7130
# Intergenic dREG bidirectionals	6681
Part of Tfit master merge?	True
Part of dREG master merge?	True