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SRR7638783 Sample ID 1726
| Paper identifier | Lloret-llinares2018rna |
| SRP accession | SRP156202 |
| GEO accession | GSE118052 |
| Samples | SRR7638783 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 115 Mb |
| Stranded gene read counts | TXT file | 924 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | E14 |
| Strain | |
| Genotype | |
| Construct | shRNA Rbm7 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 35,457,920 |
| Duplication proportion | 0.34368 |
| Proportion reads mapped | 0.7168 |
| Exon/intron ratio | 4.06545 |
| Unique read proportion | 0.75249 |
| Total # Tfit bidirectionals | 41977 |
| # Promoter Tfit bidirectionals | 9698 |
| # Intronic Tfit bidirectionals | 14443 |
| # Intergenic Tfit bidirectionals | 14250 |
| Total # dREG bidirectionals | 30298 |
| # Promoter dREG bidirectionals | 6259 |
| # Intronic dREG bidirectionals | 9513 |
| # Intergenic dREG bidirectionals | 11679 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |