DBNascent | Samples

SRR7638783 Sample ID 1726

**Data sources**
Paper identifier	Lloret-llinares2018rna
SRP accession	SRP156202
GEO accession	GSE118052
Samples	SRR7638783

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	115 Mb
Stranded gene read counts	TXT file	924 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	E14
Strain
Genotype
Construct	shRNA Rbm7

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	76
Read depth after trimming	35,457,920
Duplication proportion	0.34368
Proportion reads mapped	0.7168
Exon/intron ratio	4.06545
Unique read proportion	0.75249

**Bidirectionals**
Total # Tfit bidirectionals	41977
# Promoter Tfit bidirectionals	9698
# Intronic Tfit bidirectionals	14443
# Intergenic Tfit bidirectionals	14250
Total # dREG bidirectionals	30298
# Promoter dREG bidirectionals	6259
# Intronic dREG bidirectionals	9513
# Intergenic dREG bidirectionals	11679
Part of Tfit master merge?	True
Part of dREG master merge?	True