DBNascent | Samples

SRR7638785 Sample ID 1728

**Data sources**
Paper identifier	Lloret-llinares2018rna
SRP accession	SRP156202
GEO accession	GSE118052
Samples	SRR7638785

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	87 Mb
Stranded gene read counts	TXT file	922 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	842 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	E14
Strain
Genotype
Construct	shRNA Rbm7

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	embryoid body differentiation protocol	-3 day	0 day	3 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	76
Read depth after trimming	27,440,572
Duplication proportion	0.34701
Proportion reads mapped	0.7125
Exon/intron ratio	4.24283
Unique read proportion	0.73759

**Bidirectionals**
Total # Tfit bidirectionals	24422
# Promoter Tfit bidirectionals	7784
# Intronic Tfit bidirectionals	8493
# Intergenic Tfit bidirectionals	5298
Total # dREG bidirectionals	19413
# Promoter dREG bidirectionals	6336
# Intronic dREG bidirectionals	5915
# Intergenic dREG bidirectionals	4913
Part of Tfit master merge?	True
Part of dREG master merge?	True