DBNascent | Samples

SRR7692104 Sample ID 1856

**Data sources**
Paper identifier	Moreau2018transcriptional
SRP accession	SRP157907
GEO accession	GSE118530
Samples	SRR7692104

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	58 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	521 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct	empty control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	hypoxia (1% O2, 5% CO2)	-8 hr	0 hr	8 hr

**Extended notes**
Pipeline info and software versions
Sample notes	AdCMV is control; empty vector
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	48
Read depth after trimming	15,485,288
Duplication proportion	0.43911
Proportion reads mapped	0.8974
Exon/intron ratio	3.3221
Unique read proportion	0.61306

**Bidirectionals**
Total # Tfit bidirectionals	15005
# Promoter Tfit bidirectionals	5826
# Intronic Tfit bidirectionals	6711
# Intergenic Tfit bidirectionals	2311
Total # dREG bidirectionals	12134
# Promoter dREG bidirectionals	5952
# Intronic dREG bidirectionals	4588
# Intergenic dREG bidirectionals	1761
Part of Tfit master merge?	True
Part of dREG master merge?	True