Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR7692104 Sample ID 1856
| Paper identifier | Moreau2018transcriptional |
| SRP accession | SRP157907 |
| GEO accession | GSE118530 |
| Samples | SRR7692104 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | HUVEC |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | empty control |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | hypoxia (1% O2, 5% CO2) | -8 hr | 0 hr | 8 hr |
| Pipeline info and software versions | |
| Sample notes | AdCMV is control; empty vector |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 48 |
| Read depth after trimming | 15,485,288 |
| Duplication proportion | 0.43911 |
| Proportion reads mapped | 0.8974 |
| Exon/intron ratio | 3.3221 |
| Unique read proportion | 0.61306 |
| Total # Tfit bidirectionals | 15005 |
| # Promoter Tfit bidirectionals | 5826 |
| # Intronic Tfit bidirectionals | 6711 |
| # Intergenic Tfit bidirectionals | 2311 |
| Total # dREG bidirectionals | 12134 |
| # Promoter dREG bidirectionals | 5952 |
| # Intronic dREG bidirectionals | 4588 |
| # Intergenic dREG bidirectionals | 1761 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |