DBNascent | Samples

SRR7692105 Sample ID 1857

**Data sources**
Paper identifier	Moreau2018transcriptional
SRP accession	SRP157907
GEO accession	GSE118530
Samples	SRR7692105

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	37 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	773 Kb
dREG bidirectional regions	BED file	296 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct	Hif1-alpha

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	hypoxia (1% O2, 5% CO2)	-8 hr	0 hr	8 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	48
Read depth after trimming	16,924,649
Duplication proportion	0.74095
Proportion reads mapped	0.9008
Exon/intron ratio	3.50575
Unique read proportion	0.30771

**Bidirectionals**
Total # Tfit bidirectionals	8855
# Promoter Tfit bidirectionals	3877
# Intronic Tfit bidirectionals	3664
# Intergenic Tfit bidirectionals	972
Total # dREG bidirectionals	6886
# Promoter dREG bidirectionals	4274
# Intronic dREG bidirectionals	2088
# Intergenic dREG bidirectionals	737
Part of Tfit master merge?	True
Part of dREG master merge?	True