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SRR7722984 Sample ID 601
| Paper identifier | Delgado-benito2018chromatin |
| SRP accession | SRP158419 |
| GEO accession | GSE118794 |
| Samples | SRR7722984 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 134 Mb |
| Stranded gene read counts | TXT file | 919 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 851 Kb |
| dREG bidirectional regions | BED file | 571 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | B cell |
| Clone/Individual | |
| Strain | |
| Genotype | Zmynd8 fl/fl; Cd19-Cre |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | interleukin-4 (5 ng/mL) | -1 day | 0 day | 1 day |
| treatment | lipopolysaccharide (25 microg/mL) | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 147,798,953 |
| Duplication proportion | 0.78114 |
| Proportion reads mapped | 0.6987 |
| Exon/intron ratio | 3.6005 |
| Unique read proportion | 0.2739 |
| Total # Tfit bidirectionals | 9992 |
| # Promoter Tfit bidirectionals | 4273 |
| # Intronic Tfit bidirectionals | 3365 |
| # Intergenic Tfit bidirectionals | 658 |
| Total # dREG bidirectionals | 13158 |
| # Promoter dREG bidirectionals | 4368 |
| # Intronic dREG bidirectionals | 4096 |
| # Intergenic dREG bidirectionals | 3034 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |