DBNascent | Samples

SRR7722986 Sample ID 603

**Data sources**
Paper identifier	Delgado-benito2018chromatin
SRP accession	SRP158419
GEO accession	GSE118794
Samples	SRR7722986

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	95 Mb
Stranded gene read counts	TXT file	915 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	782 Kb
dREG bidirectional regions	BED file	469 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	B cell
Clone/Individual
Strain
Genotype	Zmynd8 fl/fl
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	interleukin-4 (5 ng/mL)	-1 day	0 day	1 day
treatment	lipopolysaccharide (25 microg/mL)	-1 day	0 day	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	113,217,607
Duplication proportion	0.78891
Proportion reads mapped	0.6769
Exon/intron ratio	3.6199
Unique read proportion	0.25208

**Bidirectionals**
Total # Tfit bidirectionals	9231
# Promoter Tfit bidirectionals	4167
# Intronic Tfit bidirectionals	2968
# Intergenic Tfit bidirectionals	428
Total # dREG bidirectionals	10830
# Promoter dREG bidirectionals	4242
# Intronic dREG bidirectionals	3041
# Intergenic dREG bidirectionals	2305
Part of Tfit master merge?	True
Part of dREG master merge?	True