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SRR7746899 Sample ID 2767
Paper identifier | Zhang2018timing |
SRP accession | SRP158674 |
GEO accession | GSE118957 |
Samples | SRR7746899 |
QC score | 4 |
Replicate | 2 |
Protocol | PRO-seq variant |
Library prep | ligation |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | reverse |
Reverse complemented? | True |
Mapped strandedness | forward |
Timecourse | False |
Control/Experimental | control |
Wildtype & Untreated? | True |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 51 Mb |
Stranded gene read counts | TXT file | 1 Mb |
Unstranded bidirectional read counts | TXT file | 21 Mb |
Tfit bidirectional regions | BED file | 837 Kb |
dREG bidirectional regions | BED file | 418 Kb |
All data files | ZIP archive |
Organism | H. sapiens |
Sample type | cell line |
Cell type | KBM7 |
Clone/Individual | |
Strain | |
Genotype | |
Construct |
Condition type | Treatment | Start time | End time | Duration |
no treatment | None | None | None |
Pipeline info and software versions | |
Sample notes | time variant PRO-seq; 32 min run-on time |
Analysis notes |
Sample QC score | 4 |
Sample NRO score | 2 |
Raw read length | 51 |
Read depth after trimming | 85,895,355 |
Duplication proportion | 0.94269 |
Proportion reads mapped | 0.9203 |
Exon/intron ratio | 3.6436 |
Unique read proportion | 0.20915 |
Total # Tfit bidirectionals | 9408 |
# Promoter Tfit bidirectionals | 3779 |
# Intronic Tfit bidirectionals | 3885 |
# Intergenic Tfit bidirectionals | 1064 |
Total # dREG bidirectionals | 9747 |
# Promoter dREG bidirectionals | 6087 |
# Intronic dREG bidirectionals | 2948 |
# Intergenic dREG bidirectionals | 1011 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |