SRR7746899 Sample ID 2767

Data sources
Paper identifier Zhang2018timing
SRP accession SRP158674
GEO accession GSE118957
Samples SRR7746899
Technical details
QC score 4
Replicate 2
Protocol PRO-seq variant
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse False
Control/Experimental control
Wildtype & Untreated? True
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 51 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 837 Kb
dREG bidirectional regions BED file 418 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type KBM7
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes time variant PRO-seq; 32 min run-on time
Analysis notes
Sample metrics
Sample QC score 4
Sample NRO score 2
Raw read length 51
Read depth after trimming 85,895,355
Duplication proportion 0.94269
Proportion reads mapped 0.9203
Exon/intron ratio 3.6436
Unique read proportion 0.20915
Bidirectionals
Total # Tfit bidirectionals 9408
# Promoter Tfit bidirectionals 3779
# Intronic Tfit bidirectionals 3885
# Intergenic Tfit bidirectionals 1064
Total # dREG bidirectionals 9747
# Promoter dREG bidirectionals 6087
# Intronic dREG bidirectionals 2948
# Intergenic dREG bidirectionals 1011
Part of Tfit master merge? True
Part of dREG master merge? True