DBNascent | Samples

SRR7824016 Sample ID 40

**Data sources**
Paper identifier	Alexander2019imprinted
SRP accession	SRP161618
GEO accession	GSE119882
Samples	SRR7824016

**Technical details**
QC score	3
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	118 Mb
Stranded gene read counts	TXT file	932 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6(f) x (C57BL/6 x CAST/EiJ)(m)
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Embryonic day 14.5 samples were pooled from 6 different embryos
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	151
Read depth after trimming	134,508,128
Duplication proportion	0.70196
Proportion reads mapped	0.3865
Exon/intron ratio	4.72471
Unique read proportion	0.63258

**Bidirectionals**
Total # Tfit bidirectionals	26971
# Promoter Tfit bidirectionals	10596
# Intronic Tfit bidirectionals	9244
# Intergenic Tfit bidirectionals	4874
Total # dREG bidirectionals	25113
# Promoter dREG bidirectionals	8049
# Intronic dREG bidirectionals	10218
# Intergenic dREG bidirectionals	4362
Part of Tfit master merge?	True
Part of dREG master merge?	True