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SRR7824016 Sample ID 40
| Paper identifier | Alexander2019imprinted |
| SRP accession | SRP161618 |
| GEO accession | GSE119882 |
| Samples | SRR7824016 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 118 Mb |
| Stranded gene read counts | TXT file | 932 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | liver |
| Clone/Individual | |
| Strain | C57BL/6(f) x (C57BL/6 x CAST/EiJ)(m) |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Embryonic day 14.5 samples were pooled from 6 different embryos |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 151 |
| Read depth after trimming | 134,508,128 |
| Duplication proportion | 0.70196 |
| Proportion reads mapped | 0.3865 |
| Exon/intron ratio | 4.72471 |
| Unique read proportion | 0.63258 |
| Total # Tfit bidirectionals | 26971 |
| # Promoter Tfit bidirectionals | 10596 |
| # Intronic Tfit bidirectionals | 9244 |
| # Intergenic Tfit bidirectionals | 4874 |
| Total # dREG bidirectionals | 25113 |
| # Promoter dREG bidirectionals | 8049 |
| # Intronic dREG bidirectionals | 10218 |
| # Intergenic dREG bidirectionals | 4362 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |