DBNascent | Samples

SRR7824018 Sample ID 42

**Data sources**
Paper identifier	Alexander2019imprinted
SRP accession	SRP161618
GEO accession	GSE119882
Samples	SRR7824018

**Technical details**
QC score	2
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	98 Mb
Stranded gene read counts	TXT file	927 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	yolk sac
Clone/Individual
Strain	C57BL/6(f) x (C57BL/6 x CAST/EiJ)(m)
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Embryonic day 14.5 samples were pooled from 6 different embryos
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	4
Raw read length	151
Read depth after trimming	59,025,242
Duplication proportion	0.54522
Proportion reads mapped	0.5113
Exon/intron ratio	7.03996
Unique read proportion	0.605

**Bidirectionals**
Total # Tfit bidirectionals	51471
# Promoter Tfit bidirectionals	14550
# Intronic Tfit bidirectionals	19278
# Intergenic Tfit bidirectionals	14649
Total # dREG bidirectionals	44822
# Promoter dREG bidirectionals	9320
# Intronic dREG bidirectionals	19214
# Intergenic dREG bidirectionals	12543
Part of Tfit master merge?	True
Part of dREG master merge?	True