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SRR7868791 Sample ID 2692
| Paper identifier | Xiao2019pervasive |
| SRP accession | SRP162015 |
| GEO accession | GSE120105 |
| Samples | SRR7868791 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 23 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 307 Kb |
| dREG bidirectional regions | BED file | 69 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HepG2 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA Hnrnpl |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Batch 1 |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 3 |
| Raw read length | 40 |
| Read depth after trimming | 17,764,099 |
| Duplication proportion | 0.8712 |
| Proportion reads mapped | 0.9279 |
| Exon/intron ratio | 5.4973 |
| Unique read proportion | 0.13615 |
| Total # Tfit bidirectionals | 3577 |
| # Promoter Tfit bidirectionals | 1889 |
| # Intronic Tfit bidirectionals | 1253 |
| # Intergenic Tfit bidirectionals | 63 |
| Total # dREG bidirectionals | 1598 |
| # Promoter dREG bidirectionals | 1022 |
| # Intronic dREG bidirectionals | 489 |
| # Intergenic dREG bidirectionals | 166 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |