DBNascent | Samples

SRR7868809 Sample ID 2710

**Data sources**
Paper identifier	Xiao2019pervasive
SRP accession	SRP162015
GEO accession	GSE120105
Samples	SRR7868809

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	31 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	531 Kb
dREG bidirectional regions	BED file	148 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HepG2
Clone/Individual
Strain
Genotype
Construct	siRNA Ptbp1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Batch 2
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	40
Read depth after trimming	15,921,543
Duplication proportion	0.77729
Proportion reads mapped	0.9109
Exon/intron ratio	4.67265
Unique read proportion	0.22886

**Bidirectionals**
Total # Tfit bidirectionals	6146
# Promoter Tfit bidirectionals	3696
# Intronic Tfit bidirectionals	1995
# Intergenic Tfit bidirectionals	314
Total # dREG bidirectionals	3447
# Promoter dREG bidirectionals	2385
# Intronic dREG bidirectionals	843
# Intergenic dREG bidirectionals	335
Part of Tfit master merge?	True
Part of dREG master merge?	True