SRR7868819 Sample ID 2720

Data sources
Paper identifier Xiao2019pervasive
SRP accession SRP162015
GEO accession GSE120105
Samples SRR7868819
Technical details
QC score 4
Replicate 1
Protocol GRO-seq
Library prep circularization
Spike-in None
Single/Paired end single
Raw strandedness forward
Reverse complemented? False
Mapped strandedness forward
Timecourse False
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 45 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 667 Kb
dREG bidirectional regions BED file 190 Kb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type cell line
Cell type HepG2
Clone/Individual
Strain
Genotype
Construct siRNA Yy1
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes Batch 3
Analysis notes Ran qc redo nextflow
Sample metrics
Sample QC score 4
Sample NRO score 4
Raw read length 51
Read depth after trimming 32,719,324
Duplication proportion 0.81265
Proportion reads mapped 0.9542
Exon/intron ratio 7.26841
Unique read proportion 0.20403
Bidirectionals
Total # Tfit bidirectionals 7732
# Promoter Tfit bidirectionals 3554
# Intronic Tfit bidirectionals 2744
# Intergenic Tfit bidirectionals 239
Total # dREG bidirectionals 4427
# Promoter dREG bidirectionals 2690
# Intronic dREG bidirectionals 1403
# Intergenic dREG bidirectionals 391
Part of Tfit master merge? True
Part of dREG master merge? True