DBNascent | Samples

SRR7868820 Sample ID 2721

**Data sources**
Paper identifier	Xiao2019pervasive
SRP accession	SRP162015
GEO accession	GSE120105
Samples	SRR7868820

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	38 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	536 Kb
dREG bidirectional regions	BED file	140 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HepG2
Clone/Individual
Strain
Genotype
Construct	siRNA Yy1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Batch 3
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	4
Raw read length	51
Read depth after trimming	25,470,885
Duplication proportion	0.81134
Proportion reads mapped	0.9541
Exon/intron ratio	7.27077
Unique read proportion	0.20144

**Bidirectionals**
Total # Tfit bidirectionals	6197
# Promoter Tfit bidirectionals	2766
# Intronic Tfit bidirectionals	2322
# Intergenic Tfit bidirectionals	128
Total # dREG bidirectionals	3258
# Promoter dREG bidirectionals	2001
# Intronic dREG bidirectionals	1028
# Intergenic dREG bidirectionals	262
Part of Tfit master merge?	True
Part of dREG master merge?	True