DBNascent | Samples

SRR7868821 Sample ID 2722

**Data sources**
Paper identifier	Xiao2019pervasive
SRP accession	SRP162015
GEO accession	GSE120105
Samples	SRR7868821

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	41 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	593 Kb
dREG bidirectional regions	BED file	174 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HepG2
Clone/Individual
Strain
Genotype
Construct	siRNA Rbm25

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Batch 3
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	51
Read depth after trimming	32,385,253
Duplication proportion	0.82902
Proportion reads mapped	0.9563
Exon/intron ratio	6.825
Unique read proportion	0.18681

**Bidirectionals**
Total # Tfit bidirectionals	6899
# Promoter Tfit bidirectionals	3462
# Intronic Tfit bidirectionals	2380
# Intergenic Tfit bidirectionals	154
Total # dREG bidirectionals	4047
# Promoter dREG bidirectionals	2554
# Intronic dREG bidirectionals	1201
# Intergenic dREG bidirectionals	386
Part of Tfit master merge?	True
Part of dREG master merge?	True