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SRR797530 Sample ID 1068
| Paper identifier | Ji2013sr |
| SRP accession | SRP020006 |
| GEO accession | GSE45517 |
| Samples | SRR797530 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 32 Mb |
| Stranded gene read counts | TXT file | 907 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1012 Kb |
| dREG bidirectional regions | BED file | 402 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | MEF |
| Clone/Individual | |
| Strain | |
| Genotype | Srsf1 -/-; dox-repressible Srsf1 exogenous (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Poor quality libraries; Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 36 |
| Read depth after trimming | 12,136,266 |
| Duplication proportion | 0.50087 |
| Proportion reads mapped | 0.6766 |
| Exon/intron ratio | 2.83333 |
| Unique read proportion | 0.49465 |
| Total # Tfit bidirectionals | 11985 |
| # Promoter Tfit bidirectionals | 5925 |
| # Intronic Tfit bidirectionals | 3576 |
| # Intergenic Tfit bidirectionals | 1307 |
| Total # dREG bidirectionals | 9351 |
| # Promoter dREG bidirectionals | 5239 |
| # Intronic dREG bidirectionals | 1883 |
| # Intergenic dREG bidirectionals | 1206 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |