DBNascent | Samples

SRR797530 Sample ID 1068

**Data sources**
Paper identifier	Ji2013sr
SRP accession	SRP020006
GEO accession	GSE45517
Samples	SRR797530

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	32 Mb
Stranded gene read counts	TXT file	907 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1012 Kb
dREG bidirectional regions	BED file	402 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	MEF
Clone/Individual
Strain
Genotype	Srsf1 -/-; dox-repressible Srsf1 exogenous (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Poor quality libraries; Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	36
Read depth after trimming	12,136,266
Duplication proportion	0.50087
Proportion reads mapped	0.6766
Exon/intron ratio	2.83333
Unique read proportion	0.49465

**Bidirectionals**
Total # Tfit bidirectionals	11985
# Promoter Tfit bidirectionals	5925
# Intronic Tfit bidirectionals	3576
# Intergenic Tfit bidirectionals	1307
Total # dREG bidirectionals	9351
# Promoter dREG bidirectionals	5239
# Intronic dREG bidirectionals	1883
# Intergenic dREG bidirectionals	1206
Part of Tfit master merge?	True
Part of dREG master merge?	True