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SRR797531 Sample ID 1069
| Paper identifier | Ji2013sr |
| SRP accession | SRP020006 |
| GEO accession | GSE45517 |
| Samples | SRR797531 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 21 Mb |
| Stranded gene read counts | TXT file | 902 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 741 Kb |
| dREG bidirectional regions | BED file | 319 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | MEF |
| Clone/Individual | |
| Strain | |
| Genotype | Srsf1 -/-; dox-repressible Srsf1 exogenous (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline | -4 day | 0 day | 4 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Poor quality libraries; Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 36 |
| Read depth after trimming | 8,449,443 |
| Duplication proportion | 0.58634 |
| Proportion reads mapped | 0.6647 |
| Exon/intron ratio | 2.87619 |
| Unique read proportion | 0.39728 |
| Total # Tfit bidirectionals | 8824 |
| # Promoter Tfit bidirectionals | 4376 |
| # Intronic Tfit bidirectionals | 2766 |
| # Intergenic Tfit bidirectionals | 853 |
| Total # dREG bidirectionals | 7428 |
| # Promoter dREG bidirectionals | 4509 |
| # Intronic dREG bidirectionals | 1446 |
| # Intergenic dREG bidirectionals | 795 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |