DBNascent | Samples

SRR797532 Sample ID 1070

**Data sources**
Paper identifier	Ji2013sr
SRP	SRP020006
Samples	SRR797532

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	30 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	440 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	MEF
Clone/Individual
Strain
Genotype	Srsf1 -/-; dox-repressible Srsf1 exogenous (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Poor quality libraries; Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	34
Read depth after trimming	18,122,532
Duplication proportion	0.58949
Proportion reads mapped	0.4592
Exon/intron ratio	2.64589
Unique read proportion	0.39139

**Bidirectionals**
Total # Tfit bidirectionals	14456
# Promoter Tfit bidirectionals	6623
# Intronic Tfit bidirectionals	4593
# Intergenic Tfit bidirectionals	1911
Total # dREG bidirectionals	10224
# Promoter dREG bidirectionals	5530
# Intronic dREG bidirectionals	2342
# Intergenic dREG bidirectionals	1299
Part of Tfit master merge?	True
Part of dREG master merge?	True