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SRR797533 Sample ID 1071
| Paper identifier | Ji2013sr |
| SRP accession | SRP020006 |
| GEO accession | GSE45517 |
| Samples | SRR797533 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 18 Mb |
| Stranded gene read counts | TXT file | 905 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 625 Kb |
| dREG bidirectional regions | BED file | 262 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | MEF |
| Clone/Individual | |
| Strain | |
| Genotype | Srsf1 -/-; dox-repressible Srsf1 exogenous (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline | -2 day | 0 day | 2 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Poor quality libraries; Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 34 |
| Read depth after trimming | 20,936,132 |
| Duplication proportion | 0.82492 |
| Proportion reads mapped | 0.3689 |
| Exon/intron ratio | 2.28826 |
| Unique read proportion | 0.15752 |
| Total # Tfit bidirectionals | 7374 |
| # Promoter Tfit bidirectionals | 3812 |
| # Intronic Tfit bidirectionals | 2014 |
| # Intergenic Tfit bidirectionals | 728 |
| Total # dREG bidirectionals | 6091 |
| # Promoter dREG bidirectionals | 4131 |
| # Intronic dREG bidirectionals | 920 |
| # Intergenic dREG bidirectionals | 505 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |