DBNascent | Samples

SRR797534 Sample ID 1072

**Data sources**
Paper identifier	Ji2013sr
SRP	SRP020006
Samples	SRR797534

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	14 Mb
Stranded gene read counts	TXT file	894 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	96 Kb
dREG bidirectional regions	BED file	20 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	MEF
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Poor quality libraries, Very sparse because libraries were almost entirely poly-As; Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	36
Read depth after trimming	23,339,659
Duplication proportion	0.93607
Proportion reads mapped	0.5163
Exon/intron ratio	0.18637
Unique read proportion	0.06428

**Bidirectionals**
Total # Tfit bidirectionals	1146
# Promoter Tfit bidirectionals	670
# Intronic Tfit bidirectionals	321
# Intergenic Tfit bidirectionals	105
Total # dREG bidirectionals	455
# Promoter dREG bidirectionals	249
# Intronic dREG bidirectionals	89
# Intergenic dREG bidirectionals	100
Part of Tfit master merge?	True
Part of dREG master merge?	True