DBNascent | Samples

SRR797535 Sample ID 1073

**Data sources**
Paper identifier	Ji2013sr
SRP	SRP020006
Samples	SRR797535

**Technical details**
QC score	5
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	10 Mb
Stranded gene read counts	TXT file	888 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	139 Kb
dREG bidirectional regions	BED file	53 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	MEF
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	DRB (100 microM)	-3 hr	0 hr	3 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Poor quality libraries, Very sparse because libraries were almost entirely poly-As; Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	36
Read depth after trimming	22,612,146
Duplication proportion	0.96044
Proportion reads mapped	0.4862
Exon/intron ratio	0.14574
Unique read proportion	0.0388

**Bidirectionals**
Total # Tfit bidirectionals	1680
# Promoter Tfit bidirectionals	1001
# Intronic Tfit bidirectionals	493
# Intergenic Tfit bidirectionals	83
Total # dREG bidirectionals	1227
# Promoter dREG bidirectionals	868
# Intronic dREG bidirectionals	197
# Intergenic dREG bidirectionals	92
Part of Tfit master merge?	True
Part of dREG master merge?	True