DBNascent | Samples

SRR7988488 Sample ID 2415

**Data sources**
Paper identifier	Takahashi2020role
SRP accession	SRP164752
GEO accession	GSE121024
Samples	SRR7988488

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	448 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	76
Read depth after trimming	163,146,125
Duplication proportion	0.55213
Proportion reads mapped	0.8667
Exon/intron ratio	3.80703
Unique read proportion	0.80282

**Bidirectionals**
Total # Tfit bidirectionals	34570
# Promoter Tfit bidirectionals	19062
# Intronic Tfit bidirectionals	11498
# Intergenic Tfit bidirectionals	5112
Total # dREG bidirectionals	43119
# Promoter dREG bidirectionals	8690
# Intronic dREG bidirectionals	21164
# Intergenic dREG bidirectionals	11139
Part of Tfit master merge?	True
Part of dREG master merge?	True