DBNascent | Samples

SRR7988490 Sample ID 2416

**Data sources**
Paper identifier	Takahashi2020role
SRP accession	SRP164752
GEO accession	GSE121024
Samples	SRR7988490

**Technical details**
QC score	2
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	311 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	76
Read depth after trimming	123,007,356
Duplication proportion	0.57948
Proportion reads mapped	0.8055
Exon/intron ratio	4.26178
Unique read proportion	0.76134

**Bidirectionals**
Total # Tfit bidirectionals	33150
# Promoter Tfit bidirectionals	17933
# Intronic Tfit bidirectionals	11643
# Intergenic Tfit bidirectionals	4310
Total # dREG bidirectionals	34237
# Promoter dREG bidirectionals	8425
# Intronic dREG bidirectionals	15885
# Intergenic dREG bidirectionals	7830
Part of Tfit master merge?	True
Part of dREG master merge?	True