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SRR8033053 Sample ID 692
| Paper identifier | Esousa2019kinetics |
| SRP accession | SRP165220 |
| GEO accession | GSE121144 |
| Samples | SRR8033053 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 97 Mb |
| Stranded gene read counts | TXT file | 922 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | TX1072 |
| Strain | C57BL/6 x CAST/EiJ |
| Genotype | dox-inducible Xist endogenous allele |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (1 microg/mL) | -2 hr | 0 hr | 2 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 101 |
| Read depth after trimming | 32,506,881 |
| Duplication proportion | 0.46106 |
| Proportion reads mapped | 0.7873 |
| Exon/intron ratio | 3.57284 |
| Unique read proportion | 0.65439 |
| Total # Tfit bidirectionals | 49678 |
| # Promoter Tfit bidirectionals | 11051 |
| # Intronic Tfit bidirectionals | 16700 |
| # Intergenic Tfit bidirectionals | 17187 |
| Total # dREG bidirectionals | 31137 |
| # Promoter dREG bidirectionals | 7520 |
| # Intronic dREG bidirectionals | 9378 |
| # Intergenic dREG bidirectionals | 11527 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |