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SRR8033054 Sample ID 693
Paper identifier | Esousa2019kinetics |
SRP accession | SRP165220 |
GEO accession | GSE121144 |
Samples | SRR8033054 |
QC score | 2 |
Replicate | 1 |
Protocol | PRO-seq |
Library prep | ligation |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | forward |
Reverse complemented? | False |
Mapped strandedness | forward |
Timecourse | True |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 70 Mb |
Stranded gene read counts | TXT file | 919 Kb |
Unstranded bidirectional read counts | TXT file | 17 Mb |
Tfit bidirectional regions | BED file | 3 Mb |
dREG bidirectional regions | BED file | 979 Kb |
All data files | ZIP archive |
Organism | M. musculus |
Sample type | cell line |
Cell type | ESC |
Clone/Individual | TX1072 |
Strain | C57BL/6 x CAST/EiJ |
Genotype | dox-inducible Xist endogenous allele |
Construct |
Condition type | Treatment | Start time | End time | Duration |
treatment | doxycycline (1 microg/mL) | -4 hr | 0 hr | 4 hr |
Pipeline info and software versions | |
Sample notes | |
Analysis notes | Ran qc redo nextflow |
Sample QC score | 2 |
Sample NRO score | 2 |
Raw read length | 101 |
Read depth after trimming | 25,150,650 |
Duplication proportion | 0.50124 |
Proportion reads mapped | 0.7384 |
Exon/intron ratio | 3.82538 |
Unique read proportion | 0.59461 |
Total # Tfit bidirectionals | 37776 |
# Promoter Tfit bidirectionals | 9303 |
# Intronic Tfit bidirectionals | 12287 |
# Intergenic Tfit bidirectionals | 12009 |
Total # dREG bidirectionals | 22733 |
# Promoter dREG bidirectionals | 7519 |
# Intronic dREG bidirectionals | 6128 |
# Intergenic dREG bidirectionals | 6992 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |