SRR8033054 Sample ID 693

Data sources
Paper identifier Esousa2019kinetics
SRP accession SRP165220
GEO accession GSE121144
Samples SRR8033054
Technical details
QC score 2
Replicate 1
Protocol PRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness forward
Reverse complemented? False
Mapped strandedness forward
Timecourse True
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 70 Mb
Stranded gene read counts TXT file 919 Kb
Unstranded bidirectional read counts TXT file 17 Mb
Tfit bidirectional regions BED file 3 Mb
dREG bidirectional regions BED file 979 Kb
All data files ZIP archive
Cellular details
Organism M. musculus
Sample type cell line
Cell type ESC
Clone/Individual TX1072
Strain C57BL/6 x CAST/EiJ
Genotype dox-inducible Xist endogenous allele
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment doxycycline (1 microg/mL) -4 hr 0 hr 4 hr
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes Ran qc redo nextflow
Sample metrics
Sample QC score 2
Sample NRO score 2
Raw read length 101
Read depth after trimming 25,150,650
Duplication proportion 0.50124
Proportion reads mapped 0.7384
Exon/intron ratio 3.82538
Unique read proportion 0.59461
Bidirectionals
Total # Tfit bidirectionals 37776
# Promoter Tfit bidirectionals 9303
# Intronic Tfit bidirectionals 12287
# Intergenic Tfit bidirectionals 12009
Total # dREG bidirectionals 22733
# Promoter dREG bidirectionals 7519
# Intronic dREG bidirectionals 6128
# Intergenic dREG bidirectionals 6992
Part of Tfit master merge? True
Part of dREG master merge? True