DBNascent | Samples

SRR8033055 Sample ID 694

**Data sources**
Paper identifier	Esousa2019kinetics
SRP accession	SRP165220
GEO accession	GSE121144
Samples	SRR8033055

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	99 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	TX1072
Strain	C57BL/6 x CAST/EiJ
Genotype	dox-inducible Xist endogenous allele
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (1 microg/mL)	-8 hr	0 hr	8 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	101
Read depth after trimming	43,764,213
Duplication proportion	0.56201
Proportion reads mapped	0.7397
Exon/intron ratio	3.89112
Unique read proportion	0.57394

**Bidirectionals**
Total # Tfit bidirectionals	54946
# Promoter Tfit bidirectionals	12256
# Intronic Tfit bidirectionals	18644
# Intergenic Tfit bidirectionals	18819
Total # dREG bidirectionals	36670
# Promoter dREG bidirectionals	8715
# Intronic dREG bidirectionals	11216
# Intergenic dREG bidirectionals	13457
Part of Tfit master merge?	True
Part of dREG master merge?	True