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SRR8111715 Sample ID 1436
| Paper identifier | Leroy2019ledgf |
| SRP accession | SRP153901 |
| GEO accession | GSE117155 |
| Samples | SRR8111715 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 64 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | myoblast |
| Clone/Individual | clone 2 |
| Strain | |
| Genotype | Hdgf -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 35 |
| Read depth after trimming | 44,158,103 |
| Duplication proportion | 0.63083 |
| Proportion reads mapped | 0.5086 |
| Exon/intron ratio | 5.78311 |
| Unique read proportion | 0.45463 |
| Total # Tfit bidirectionals | 43706 |
| # Promoter Tfit bidirectionals | 14211 |
| # Intronic Tfit bidirectionals | 18984 |
| # Intergenic Tfit bidirectionals | 11390 |
| Total # dREG bidirectionals | 38510 |
| # Promoter dREG bidirectionals | 11684 |
| # Intronic dREG bidirectionals | 17426 |
| # Intergenic dREG bidirectionals | 9969 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |