DBNascent | Samples

SRR8111715 Sample ID 1436

**Data sources**
Paper identifier	Leroy2019ledgf
SRP accession	SRP153901
GEO accession	GSE117155
Samples	SRR8111715

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	64 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	myoblast
Clone/Individual	clone 2
Strain
Genotype	Hdgf -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	35
Read depth after trimming	44,158,103
Duplication proportion	0.63083
Proportion reads mapped	0.5086
Exon/intron ratio	5.78311
Unique read proportion	0.45463

**Bidirectionals**
Total # Tfit bidirectionals	43706
# Promoter Tfit bidirectionals	14211
# Intronic Tfit bidirectionals	18984
# Intergenic Tfit bidirectionals	11390
Total # dREG bidirectionals	38510
# Promoter dREG bidirectionals	11684
# Intronic dREG bidirectionals	17426
# Intergenic dREG bidirectionals	9969
Part of Tfit master merge?	True
Part of dREG master merge?	True