SRR8111717 Sample ID 1438

Data sources
Paper identifier Leroy2019ledgf
SRP accession SRP153901
GEO accession GSE117155
Samples SRR8111717
Technical details
QC score 3
Replicate 1
Protocol PRO-seq
Library prep ligation
Spike-in D. melanogaster
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse False
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 81 Mb
Stranded gene read counts TXT file 1 Mb
Unstranded bidirectional read counts TXT file 21 Mb
Tfit bidirectional regions BED file 4 Mb
dREG bidirectional regions BED file 2 Mb
All data files ZIP archive
Cellular details
Organism H. sapiens
Sample type primary cell
Cell type myoblast
Clone/Individual clone 2
Strain
Genotype Hdgf -/-; Hdgf exogenous (stable)
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes
Sample metrics
Sample QC score 3
Sample NRO score 2
Raw read length 35
Read depth after trimming 76,967,780
Duplication proportion 0.65609
Proportion reads mapped 0.4045
Exon/intron ratio 4.60294
Unique read proportion 0.48926
Bidirectionals
Total # Tfit bidirectionals 41603
# Promoter Tfit bidirectionals 14488
# Intronic Tfit bidirectionals 17542
# Intergenic Tfit bidirectionals 10464
Total # dREG bidirectionals 37775
# Promoter dREG bidirectionals 11565
# Intronic dREG bidirectionals 17352
# Intergenic dREG bidirectionals 9512
Part of Tfit master merge? True
Part of dREG master merge? True