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SRR8111717 Sample ID 1438
Paper identifier | Leroy2019ledgf |
SRP accession | SRP153901 |
GEO accession | GSE117155 |
Samples | SRR8111717 |
QC score | 3 |
Replicate | 1 |
Protocol | PRO-seq |
Library prep | ligation |
Spike-in | D. melanogaster |
Single/Paired end | single |
Raw strandedness | reverse |
Reverse complemented? | True |
Mapped strandedness | forward |
Timecourse | False |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 81 Mb |
Stranded gene read counts | TXT file | 1 Mb |
Unstranded bidirectional read counts | TXT file | 21 Mb |
Tfit bidirectional regions | BED file | 4 Mb |
dREG bidirectional regions | BED file | 2 Mb |
All data files | ZIP archive |
Organism | H. sapiens |
Sample type | primary cell |
Cell type | myoblast |
Clone/Individual | clone 2 |
Strain | |
Genotype | Hdgf -/-; Hdgf exogenous (stable) |
Construct |
Condition type | Treatment | Start time | End time | Duration |
no treatment | None | None | None |
Pipeline info and software versions | |
Sample notes | |
Analysis notes |
Sample QC score | 3 |
Sample NRO score | 2 |
Raw read length | 35 |
Read depth after trimming | 76,967,780 |
Duplication proportion | 0.65609 |
Proportion reads mapped | 0.4045 |
Exon/intron ratio | 4.60294 |
Unique read proportion | 0.48926 |
Total # Tfit bidirectionals | 41603 |
# Promoter Tfit bidirectionals | 14488 |
# Intronic Tfit bidirectionals | 17542 |
# Intergenic Tfit bidirectionals | 10464 |
Total # dREG bidirectionals | 37775 |
# Promoter dREG bidirectionals | 11565 |
# Intronic dREG bidirectionals | 17352 |
# Intergenic dREG bidirectionals | 9512 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |