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SRR8111718 Sample ID 1439
| Paper identifier | Leroy2019ledgf |
| SRP accession | SRP153901 |
| GEO accession | GSE117155 |
| Samples | SRR8111718 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 123 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | myoblast |
| Clone/Individual | clone 10 |
| Strain | |
| Genotype | Hdgf -/-; Hdgf exogenous (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 35 |
| Read depth after trimming | 108,355,987 |
| Duplication proportion | 0.62105 |
| Proportion reads mapped | 0.4253 |
| Exon/intron ratio | 3.41215 |
| Unique read proportion | 0.57561 |
| Total # Tfit bidirectionals | 48845 |
| # Promoter Tfit bidirectionals | 15929 |
| # Intronic Tfit bidirectionals | 20387 |
| # Intergenic Tfit bidirectionals | 13295 |
| Total # dREG bidirectionals | 45338 |
| # Promoter dREG bidirectionals | 11292 |
| # Intronic dREG bidirectionals | 21652 |
| # Intergenic dREG bidirectionals | 12481 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |