DBNascent | Samples

SRR816998 Sample ID 1443

**Data sources**
Paper identifier	Li2013functional
SRP	SRP020561
Samples	SRR816998

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	103 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	897 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	42
Read depth after trimming	27,311,768
Duplication proportion	0.34174
Proportion reads mapped	0.8747
Exon/intron ratio	2.41447
Unique read proportion	0.70065

**Bidirectionals**
Total # Tfit bidirectionals	22334
# Promoter Tfit bidirectionals	8941
# Intronic Tfit bidirectionals	9735
# Intergenic Tfit bidirectionals	3884
Total # dREG bidirectionals	20725
# Promoter dREG bidirectionals	8593
# Intronic dREG bidirectionals	9011
# Intergenic dREG bidirectionals	3642
Part of Tfit master merge?	True
Part of dREG master merge?	True