DBNascent | Samples

SRR816999 Sample ID 1445

**Data sources**
Paper identifier	Li2013functional
SRP accession	SRP020561
GEO accession	GSE45822
Samples	SRR816999

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	84 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	531 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	36
Read depth after trimming	24,610,291
Duplication proportion	0.36489
Proportion reads mapped	0.7876
Exon/intron ratio	2.01538
Unique read proportion	0.65631

**Bidirectionals**
Total # Tfit bidirectionals	18197
# Promoter Tfit bidirectionals	6885
# Intronic Tfit bidirectionals	8391
# Intergenic Tfit bidirectionals	2582
Total # dREG bidirectionals	12287
# Promoter dREG bidirectionals	5196
# Intronic dREG bidirectionals	4938
# Intergenic dREG bidirectionals	2282
Part of Tfit master merge?	True
Part of dREG master merge?	True