DBNascent | Samples

SRR817001 Sample ID 1447

**Data sources**
Paper identifier	Li2013functional
SRP accession	SRP020561
GEO accession	GSE45822
Samples	SRR817001

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	86 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	556 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	36
Read depth after trimming	23,310,714
Duplication proportion	0.29597
Proportion reads mapped	0.789
Exon/intron ratio	1.78349
Unique read proportion	0.72546

**Bidirectionals**
Total # Tfit bidirectionals	19011
# Promoter Tfit bidirectionals	7367
# Intronic Tfit bidirectionals	8638
# Intergenic Tfit bidirectionals	2781
Total # dREG bidirectionals	12872
# Promoter dREG bidirectionals	5709
# Intronic dREG bidirectionals	5077
# Intergenic dREG bidirectionals	2331
Part of Tfit master merge?	True
Part of dREG master merge?	True