DBNascent | Samples

SRR817002 Sample ID 1447

**Data sources**
Paper identifier	Li2013functional
SRP	SRP020561
Samples	SRR817002

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	68 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	766 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA Smc3

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	48
Read depth after trimming	41,837,138
Duplication proportion	0.72972
Proportion reads mapped	0.7595
Exon/intron ratio	4.11433
Unique read proportion	0.33652

**Bidirectionals**
Total # Tfit bidirectionals	24623
# Promoter Tfit bidirectionals	11387
# Intronic Tfit bidirectionals	9921
# Intergenic Tfit bidirectionals	3225
Total # dREG bidirectionals	17671
# Promoter dREG bidirectionals	8616
# Intronic dREG bidirectionals	6261
# Intergenic dREG bidirectionals	2682
Part of Tfit master merge?	True
Part of dREG master merge?	True