DBNascent | Samples

SRR8234173 Sample ID 2243

**Data sources**
Paper identifier	Sendinc2019pcif1
SRP accession	SRP170033
GEO accession	GSE122802
Samples	SRR8234173

**Technical details**
QC score	1
Replicate	3
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	137 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MEL624
Clone/Individual	sgRNA control
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	42
Read depth after trimming	24,555,367
Duplication proportion	0.2548
Proportion reads mapped	0.7471
Exon/intron ratio	3.47966
Unique read proportion	0.73352

**Bidirectionals**
Total # Tfit bidirectionals	32692
# Promoter Tfit bidirectionals	9791
# Intronic Tfit bidirectionals	14350
# Intergenic Tfit bidirectionals	8584
Total # dREG bidirectionals	23724
# Promoter dREG bidirectionals	8052
# Intronic dREG bidirectionals	9832
# Intergenic dREG bidirectionals	5725
Part of Tfit master merge?	True
Part of dREG master merge?	True