SRR8235065 Sample ID 666

Data sources
Paper identifier Elrod2019integrator
SRP accession SRP146077
GEO accession GSE114467
Samples SRR8235065
Technical details
QC score 2
Replicate 2
Protocol PRO-seq
Library prep ligation
Spike-in M. musculus
Single/Paired end paired
Raw strandedness read1 reverse
Reverse complemented? False
Mapped strandedness read1 reverse
Timecourse False
Control/Experimental control
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 94 Mb
Stranded gene read counts TXT file 725 Kb
Unstranded bidirectional read counts TXT file
Tfit bidirectional regions BED file
dREG bidirectional regions BED file
All data files ZIP archive
Cellular details
Organism D. melanogaster
Sample type cell line
Cell type DL1
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment dsRNA beta-galactosidase (2 microg/1.5 million cells) -60 hr 0 hr 60 hr
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes Ran qc redo nextflow
Sample metrics
Sample QC score 2
Sample NRO score 1
Raw read length 42
Read depth after trimming 19,937,531
Duplication proportion 0.39731
Proportion reads mapped 0.7221
Exon/intron ratio 2.61153
Unique read proportion 0.41949
Bidirectionals
Total # Tfit bidirectionals None
# Promoter Tfit bidirectionals None
# Intronic Tfit bidirectionals None
# Intergenic Tfit bidirectionals None
Total # dREG bidirectionals None
# Promoter dREG bidirectionals None
# Intronic dREG bidirectionals None
# Intergenic dREG bidirectionals None
Part of Tfit master merge? False
Part of dREG master merge? False