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SRR8235069 Sample ID 670
| Paper identifier | Elrod2019integrator |
| SRP accession | SRP146077 |
| GEO accession | GSE114467 |
| Samples | SRR8235069 |
| QC score | 2 |
| Replicate | 3 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | M. musculus |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 83 Mb |
| Stranded gene read counts | TXT file | 726 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | cell line |
| Cell type | DL1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | dsRNA IntS9 (2 microg/1.5 million cells) | -60 hr | 0 hr | 60 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 42 |
| Read depth after trimming | 17,456,904 |
| Duplication proportion | 0.39423 |
| Proportion reads mapped | 0.7156 |
| Exon/intron ratio | 2.88896 |
| Unique read proportion | 0.39488 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |