Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR826227 Sample ID 1420
| Paper identifier | Lam2013rev |
| SRP accession | SRP021025 |
| GEO accession | GSE45914 |
| Samples | SRR826227 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-cap |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 26 Mb |
| Stranded gene read counts | TXT file | 908 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | RAW264.7 |
| Clone/Individual | |
| Strain | |
| Genotype | BirA (stable); Rev-erb-alpha BLRP (stable) |
| Construct | BirA; Rev-erb-alpha |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | BLRP is a tag for biotinylation |
| Analysis notes | Preseq required separate run with -D flag |
| Sample QC score | 4 |
| Sample NRO score | 4 |
| Raw read length | 50 |
| Read depth after trimming | 8,910,234 |
| Duplication proportion | 0.70769 |
| Proportion reads mapped | 0.8692 |
| Exon/intron ratio | 7.11386 |
| Unique read proportion | 0.30844 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |