DBNascent | Samples

SRR826227 Sample ID 1420

**Data sources**
Paper identifier	Lam2013rev
SRP accession	SRP021025
GEO accession	GSE45914
Samples	SRR826227

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-cap
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	26 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	RAW264.7
Clone/Individual
Strain
Genotype	BirA (stable); Rev-erb-alpha BLRP (stable)
Construct	BirA; Rev-erb-alpha

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	BLRP is a tag for biotinylation
Analysis notes	Preseq required separate run with -D flag

**Sample metrics**
Sample QC score	4
Sample NRO score	4
Raw read length	50
Read depth after trimming	8,910,234
Duplication proportion	0.70769
Proportion reads mapped	0.8692
Exon/intron ratio	7.11386
Unique read proportion	0.30844

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False