DBNascent | Samples

SRR828695 Sample ID 871

**Data sources**
Paper identifier	Galbraith2013hif1a
SRP	SRP013319
Samples	SRR828695

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	55 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	676 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow; originally labeled and processed as tech reps, but clearly says in the paper that they're biological replicates

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	54,636,150
Duplication proportion	0.88664
Proportion reads mapped	0.8586
Exon/intron ratio	3.72117
Unique read proportion	0.31956

**Bidirectionals**
Total # Tfit bidirectionals	23806
# Promoter Tfit bidirectionals	11340
# Intronic Tfit bidirectionals	8782
# Intergenic Tfit bidirectionals	3042
Total # dREG bidirectionals	15668
# Promoter dREG bidirectionals	7306
# Intronic dREG bidirectionals	5114
# Intergenic dREG bidirectionals	2542
Part of Tfit master merge?	True
Part of dREG master merge?	True