DBNascent | Samples

SRR828729 Sample ID 873

**Data sources**
Paper identifier	Galbraith2013hif1a
SRP	SRP013319
Samples	SRR828729

**Technical details**
QC score	3
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	241 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow; originally labeled and processed as tech reps, but clearly says in the paper that they're biological replicates

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	136,926,976
Duplication proportion	0.73197
Proportion reads mapped	0.9291
Exon/intron ratio	3.53941
Unique read proportion	0.55826

**Bidirectionals**
Total # Tfit bidirectionals	52457
# Promoter Tfit bidirectionals	19420
# Intronic Tfit bidirectionals	19090
# Intergenic Tfit bidirectionals	12787
Total # dREG bidirectionals	41649
# Promoter dREG bidirectionals	8939
# Intronic dREG bidirectionals	18253
# Intergenic dREG bidirectionals	12995
Part of Tfit master merge?	True
Part of dREG master merge?	True