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SRR8364243 Sample ID 1
| Paper identifier | Aeby2020decapping |
| SRP accession | SRP174237 |
| GEO accession | GSE124289 |
| Samples | SRR8364243 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 174 Mb |
| Stranded gene read counts | TXT file | 930 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 7 Mb |
| dREG bidirectional regions | BED file | 3 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | |
| Strain | C57BL/6J x CAST/EiJ |
| Genotype | Tsix +/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Differentiation inhibited by 50 U/mL ESGRO leukaemia inhibitory factor (LIF); Library prep cites Kwak2013 and Mahat2016 |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 54,206,834 |
| Duplication proportion | 0.47863 |
| Proportion reads mapped | 0.7977 |
| Exon/intron ratio | 4.74061 |
| Unique read proportion | 0.60201 |
| Total # Tfit bidirectionals | 79544 |
| # Promoter Tfit bidirectionals | 13648 |
| # Intronic Tfit bidirectionals | 28152 |
| # Intergenic Tfit bidirectionals | 32814 |
| Total # dREG bidirectionals | 63678 |
| # Promoter dREG bidirectionals | 9316 |
| # Intronic dREG bidirectionals | 23033 |
| # Intergenic dREG bidirectionals | 26349 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |