Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR8384737 Sample ID 1232
| Paper identifier | Korkmaz2019crispr |
| SRP accession | SRP175029 |
| GEO accession | GSE124572 |
| Samples | SRR8384737 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 100 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 819 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | sgRNA 1118 |
| Strain | |
| Genotype | CTCF binding site -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | sgRNA1118 targeting CTCF binding site involved in the regulation of the expression of PREX1 |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 65 |
| Read depth after trimming | 25,445,070 |
| Duplication proportion | 0.32293 |
| Proportion reads mapped | 0.9948 |
| Exon/intron ratio | 3.17604 |
| Unique read proportion | 0.79181 |
| Total # Tfit bidirectionals | 33321 |
| # Promoter Tfit bidirectionals | 12123 |
| # Intronic Tfit bidirectionals | 14726 |
| # Intergenic Tfit bidirectionals | 5591 |
| Total # dREG bidirectionals | 18811 |
| # Promoter dREG bidirectionals | 7802 |
| # Intronic dREG bidirectionals | 7260 |
| # Intergenic dREG bidirectionals | 3264 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |