DBNascent | Samples

SRR8429046 Sample ID 2164

**Data sources**
Paper identifier	Sasse2019nascent
SRP accession	SRP178237
GEO accession	GSE124916
Samples	SRR8429046

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	random primed
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	223 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	BEAS-2B
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-10 min	0 min	10 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	151
Read depth after trimming	83,424,668
Duplication proportion	0.57038
Proportion reads mapped	0.9589
Exon/intron ratio	2.60852
Unique read proportion	0.67654

**Bidirectionals**
Total # Tfit bidirectionals	38102
# Promoter Tfit bidirectionals	15100
# Intronic Tfit bidirectionals	13095
# Intergenic Tfit bidirectionals	9303
Total # dREG bidirectionals	29841
# Promoter dREG bidirectionals	8076
# Intronic dREG bidirectionals	13582
# Intergenic dREG bidirectionals	7056
Part of Tfit master merge?	True
Part of dREG master merge?	True