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SRR8429057 Sample ID 2175
| Paper identifier | Sasse2019nascent |
| SRP accession | SRP178237 |
| GEO accession | GSE124916 |
| Samples | SRR8429057 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | BEAS-2B |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | TNF-alpha (20 ng/mL) | -30 min | 0 min | 30 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 151 |
| Read depth after trimming | 108,866,146 |
| Duplication proportion | 0.88186 |
| Proportion reads mapped | 0.91 |
| Exon/intron ratio | 1.73521 |
| Unique read proportion | 0.48054 |
| Total # Tfit bidirectionals | 24204 |
| # Promoter Tfit bidirectionals | 8530 |
| # Intronic Tfit bidirectionals | 10373 |
| # Intergenic Tfit bidirectionals | 4675 |
| Total # dREG bidirectionals | 17615 |
| # Promoter dREG bidirectionals | 6595 |
| # Intronic dREG bidirectionals | 7393 |
| # Intergenic dREG bidirectionals | 3153 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |