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SRR8429060 Sample ID 2178
| Paper identifier | Sasse2019nascent |
| SRP accession | SRP178237 |
| GEO accession | GSE124916 |
| Samples | SRR8429060 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | BEAS-2B |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | TNF-alpha (20 ng/mL) | -30 min | 0 min | 30 min |
| treatment | dexamethasone (100 nM) | -30 min | 0 min | 30 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 151 |
| Read depth after trimming | 79,161,306 |
| Duplication proportion | 0.68703 |
| Proportion reads mapped | 0.9122 |
| Exon/intron ratio | 2.6458 |
| Unique read proportion | 0.57662 |
| Total # Tfit bidirectionals | 36658 |
| # Promoter Tfit bidirectionals | 11816 |
| # Intronic Tfit bidirectionals | 14585 |
| # Intergenic Tfit bidirectionals | 8757 |
| Total # dREG bidirectionals | 26613 |
| # Promoter dREG bidirectionals | 6854 |
| # Intronic dREG bidirectionals | 12304 |
| # Intergenic dREG bidirectionals | 6008 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |