DBNascent | Samples

SRR8456237 Sample ID 2025

**Data sources**
Paper identifier	Parida2019nucleotide
SRP accession	SRP141182
GEO accession	GSE113394
Samples	SRR8456237

**Technical details**
QC score	4
Replicate	1
Protocol	PRO-cap
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	35 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	478 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	foreskin fibroblast
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO (0.1%)	-1 hr	0 hr	1 hr
treatment	HCMV strain Towne varS	-5760 min	-5670 min	90 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	151
Read depth after trimming	52,696,735
Duplication proportion	0.58138
Proportion reads mapped	0.1075
Exon/intron ratio	6.64505
Unique read proportion	0.30493

**Bidirectionals**
Total # Tfit bidirectionals	19613
# Promoter Tfit bidirectionals	11806
# Intronic Tfit bidirectionals	6887
# Intergenic Tfit bidirectionals	1622
Total # dREG bidirectionals	11124
# Promoter dREG bidirectionals	8107
# Intronic dREG bidirectionals	2947
# Intergenic dREG bidirectionals	784
Part of Tfit master merge?	True
Part of dREG master merge?	True