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SRR8456237 Sample ID 2025
| Paper identifier | Parida2019nucleotide |
| SRP accession | SRP141182 |
| GEO accession | GSE113394 |
| Samples | SRR8456237 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | PRO-cap |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | foreskin fibroblast |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO (0.1%) | -1 hr | 0 hr | 1 hr |
| treatment | HCMV strain Towne varS | -5760 min | -5670 min | 90 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 3 |
| Raw read length | 151 |
| Read depth after trimming | 52,696,735 |
| Duplication proportion | 0.58138 |
| Proportion reads mapped | 0.1075 |
| Exon/intron ratio | 6.64505 |
| Unique read proportion | 0.30493 |
| Total # Tfit bidirectionals | 19613 |
| # Promoter Tfit bidirectionals | 11806 |
| # Intronic Tfit bidirectionals | 6887 |
| # Intergenic Tfit bidirectionals | 1622 |
| Total # dREG bidirectionals | 11124 |
| # Promoter dREG bidirectionals | 8107 |
| # Intronic dREG bidirectionals | 2947 |
| # Intergenic dREG bidirectionals | 784 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |